Dataset

Plant host and plant diversity effects on rhizosphere microbial community composition, diversity, structure, and function. - Experiment 284

Streptomyces pathogen suppressive activity in plant communities varying in diversity

Years Available: 2010

Principle Investigators

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Environmental Data Initiative data package

EDI Package ID	DOI
knb-lter-cdr.529.8	doi:10.6073/pasta/1225002ccaa691f5d3f4a6440f1fe675

ATTRIBUTES

Field	Name	Definition	Unit	Code
1	Sample Year	Year soil sample was collected
2	Sample	Sample name (Plant, plot, and diversity trt)
3	Sample Site	Physical site of soil sample
4	Plot ID	The plot number in Big Bio the sample was collected from
5	Plant	The nearest host plant species the soil sample was collected next to.		Ag=Andropogon gerardii;Lp=Lupinus perennis;Ss=Schizachyrium scoparium;Lc=Lespedeza capitata
6	Plot Diversity	Number of species planted in plot	number
7	LogBact	The Log10 transformation of the (all) mean bacterial density (Avg_BactCFU)	dimensionless
8	LogStrep	The Log10 transformation of the mean Streptomyces density (Avg_StrepCFU)	dimensionless
9	LogInhib	The Log10 transformation of the inhibitory Streptomyces density (Avg_InhibCFU)	dimensionless
10	Avg_BactCFU	The mean bacterial density per sample (Colony Forming Units (CFU) per gram of soil)	CFU/g
11	Avg_StrepCFU	The mean Streptomyces density per sample (Colony Forming Units (CFU) per gram of soil)	CFU/g
12	Avg_InhibCFU	The mean density of inhibitory Streptomyces per sample (Colony Forming Units (CFU) per gram of soil)	CFU/g
13	Avg_KZ	The mean size of the inhibition zone produced by a Streptomyces colony in response to the overlay isolate (4-21, 1324.2, or 87; TOTAL, mean of all response	millimeter
14	Avg_PropInhib	The mean proportion of the inhibitory Streptomyces density of the total Streptomyces density; mean of all response isolates per sample (TOTAL)	dimensionless
15	87_BactCFU	The mean bacterial density of plates overlaid with isolate 87 (response isolate), per sample	CFU/g
16	87_StrepCFU	The mean Streptomyces density of plates overlaid with isolate 87 (response isolate), per sample	CFU/g
17	87_InhibCFU	The mean density of plates overlaid with isolate 87 (response isolate) of inhibitory Streptomyces per sample	CFU/g
18	87_KZ	The mean size of the inhibition zone produced by a Streptomyces colony in response to the overlay isolate 87 per sample	millimeter
19	87_PropInhib	The mean proportion of the inhibitory Streptomyces density of the total Streptomyces density per sample of plates overlaid with isolate 87	dimensionless
20	4-21_BactCFU	The mean bacterial density of plates overlaid with isolate 4-21 (response isolate), per sample	CFU/g
21	4-21_StrepCFU	The mean Streptomyces density of plates overlaid with isolate 4-21 (response isolate), per sample	CFU/g
22	4-21_InhibCFU	The mean density of plates overlaid with isolate 4-21 (response isolate) of inhibitory Streptomyces per sample	CFU/g
23	4-21_KZ	The mean size of the inhibition zone produced by a Streptomyces colony in response to the overlay isolate 4-21 per sample	millimeter
24	4-21_PropInhib	The mean proportion of the inhibitory Streptomyces density of the total Streptomyces density per sample of plates overlaid with isolate 4-21	dimensionless
25	1324-2 BactCFU	The mean bacterial density of plates overlaid with isolate 1324-2 (response isolate), per sample	CFU/g
26	1324-2_StrepCFU	The mean Streptomyces density of plates overlaid with isolate 1324-2 (response isolate), per sample	CFU/g
27	1324-2_InhibCFU	The mean density of plates overlaid with isolate 1324-2 (response isolate) of inhibitory Streptomyces per sample	CFU/g
28	1324-2_KZ	The mean size of the inhibition zone produced by a Streptomyces colony in response to the overlay isolate 1324-2 per sample	millimeter
29	1324-2_PropInhib	The mean proportion of the inhibitory Streptomyces density of the total Streptomyces density per sample of plates overlaid with isolate 1324-2	dimensionless

SAMPLE DATASET

Sample Year	Sample	Sample Site	Plot ID	Plant	Plot Diversity	LogBact	LogStrep	LogInhib	Avg_BactCFU	Avg_StrepCFU	Avg_InhibCFU	Avg_KZ	Avg_PropInhib	87_BactCFU	87_StrepCFU	87_InhibCFU	87_KZ	87_PropInhib	4-21_BactCFU	4-21_StrepCFU	4-21_InhibCFU	4-21_KZ	4-21_PropInhib	1324-2 BactCFU	1324-2_StrepCFU	1324-2_InhibCFU	1324-2_KZ	1324-2_PropInhib
2009	Ag146a08	Big Biodiversity Field	146	Ag	8	6.1124	6.0714	5.5321	1295420	1178591	340501	3.44	0.27	1572706	1348034	748908	4.46	0.55	1160271	1076396	167750	3.03	0.16	1153282	1111344	104844	2.82	0.10
2009	Ag283a08	Big Biodiversity Field	283	Ag	8	6.1581	6.1398	5.7691	1439217	1379604	587609	2.35	0.43	1711731	1686183	587609	3.02	0.33	1481797	1354056	689802	1.85	0.52	1124122	1098574	485416	2.19	0.44
2009	Ag292a08	Big Biodiversity Field	292	Ag	8	6.4765	6.4385	5.7677	2995816	2744770	585774	3.04	0.22	2535565	2158996	476987	2.81	0.23	3062762	2937238	627615	3.56	0.21	3389121	3138075	652720	2.74	0.20
2009	Lc057a08	Big Biodiversity Field	57	Lc	8	6.5025	6.4411	5.8270	3180864	2761225	671423	2.07	0.24	3424255	2971045	780529	2.54	0.27	2819975	2442300	528745	2.00	0.21	3298363	2870332	704994	1.67	0.25
2009	Lc146a08	Big Biodiversity Field	146	Lc	8	5.8360	5.8300	5.4714	685411	676085	296079	2.91	0.44	629459	608477	328717	3.46	0.55	797314	797314	363687	2.92	0.45	629459	622465	195832	2.36	0.31
2009	Lc206a08	Big Biodiversity Field	206	Lc	8	6.2826	6.2572	5.7009	1916719	1807910	502197	2.48	0.26	1958569	1883239	426868	1.59	0.23	1883239	1782800	401758	4.26	0.20	1908349	1757690	677966	1.59	0.34
2009	Lp012a08	Big Biodiversity Field	12	Lp	8	6.3026	6.2343	5.7107	2007321	1715079	513638	2.04	0.30	2231668	1912859	460503	1.30	0.24	1983705	1567481	478215	2.19	0.31	1806589	1664896	602196	2.64	0.34
2009	Lp206a08	Big Biodiversity Field	206	Lp	8	6.3770	6.3308	5.6154	2382281	2142029	412467	2.18	0.20	2216687	1643836	473225	2.41	0.28	2440427	2391126	394412	2.08	0.16	2489729	2391126	369762	2.05	0.15
2009	Lp292a08	Big Biodiversity Field	292	Lp	8	6.2823	6.2403	5.5669	1915495	1739180	368891	2.02	0.22	2258406	2080778	228378	2.38	0.09	1606023	1480552	577164	1.97	0.38	1882058	1656211	301129	1.71	0.19
2009	Ss012a08	Big Biodiversity Field	12	Ss	8	6.3198	6.2756	5.6414	2088421	1886316	437895	2.70	0.24	2172632	1920000	378947	1.74	0.20	2400000	2223158	530526	4.20	0.25	1692632	1515789	404211	2.16	0.27
2009	Ss057a08	Big Biodiversity Field	57	Ss	8	6.2289	6.1882	5.7665	1694123	1542236	584180	2.38	0.39	1577287	1542236	665966	2.00	0.45	1717490	1437084	525762	2.38	0.38	1787592	1647389	560813	2.78	0.34
2009	Ss283a08	Big Biodiversity Field	283	Ss	8	6.2743	6.2574	5.6493	1880814	1808987	445987	3.12	0.25	1679198	1604010	426065	3.23	0.28	1893939	1858866	385802	2.90	0.21	2069304	1964085	526094	3.24	0.27

Download dataset acge284 Plant host and plant diversity effects on rhizosphere microbial community composition, diversity, structure, and function.: Streptomyces pathogen suppressive activity in plant communities varying in diversity
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